Protein Language Models for Structure Prediction

Objectives

• Learn about protein language models and their applications

• Understand tokenization and embedding of amino acid sequences

• Explore protein structure prediction techniques

Protein Language Models

Discussion

Tokenization and Embedding

Discussion

Protein Structure Prediction

Discussion

Keypoints

• Protein language models use transformer architectures for sequence analysis

• Tokenization and embedding convert amino acid sequences to numerical representations

• Structure prediction models can predict atomic coordinates and contact maps

• Applications include drug discovery and protein engineering